Publications
| Year | Authors | Title | Journal | DOI |
|---|---|---|---|---|
| 2020 | Schmidt J, Claussen J, Worlein N, Eggert A, Fleury D, Garnett T, Gerth S | Drought and heat stress tolerance screening in wheat using computed tomography | Plant Methods 16 (1) | http://dx.doi.org/10.1186/s13007-020-00565-w |
| 2020 | Schmidt J, Tricker PJ, Eckermann P, Kalambettu P, Garcia M, Fleury D | Novel Alleles for Combined Drought and Heat Stress Tolerance in Wheat | Front. Plant Sci. 10 | http://dx.doi.org/10.3389/fpls.2019.01800 |
| 2020 | Eichi VR, Okamoto M, Garnett T, Eckermann P, Darrier B, Riboni M, Langridge P | Strengths and Weaknesses of National Variety Trial Data for Multi-Environment Analysis: A Case Study on Grain Yield and Protein Content | Agronomy 10 (5): 753. | http://dx.doi.org/10.3390/agronomy10050753 |
| 2020 | Tura H, Edwards J, Gahlaut V, Garcia M, Sznajder B, Baumann U, Shahinnia F, Reynolds M, Langridge P, Balyan HS, Gupta PK, Schnurbusch T, Fleury D | QTL analysis and fine mapping of a QTL for yield-related traits in wheat grown in dry and hot environments | Theoretical and Applied Genetics, 133(1):239-257 | http://dx.doi.org/10.1007/s00122-019-03454-6 |
| 2020 |
El Habti A, Fleury D, Jewell N, Garnett T, Tricker PJ |
Tolerance of Combined Drought and Heat Stress Is Associated With Transpiration Maintenance and Water Soluble Carbohydrates in Wheat Grains | Front. Plant Sci. 11:1555 | https://www.frontiersin.org/article/10.3389/fpls.2020.568693 |
| 2019 | Garcia M, Eckermann P, Haefele S, Satija S, Sznajder B, Timmins A, Baumann U, Wolters P, Mather DE, Fleury D | Genome-wide association mapping of grain yield in a diverse collection of spring wheat (Triticum aestivum L.) evaluated in southern Australia | PLOS ONE 14(2): e0211730 | http://dx.doi.org/10.1371/journal.pone.0211730 |
| 2019 | Khan Z and Miklavcic SJ | An Automatic Field Plot Extraction Method from Aerial Orthomosaic Images | Front. Plant Sci. 10 | http://dx.doi.org/10.3389/fpls.2019.00683 |
| 2019 | Arndell T, Sharma N, Langridge P, Baumann U, Watson-Haigh NS, Whitford R | gRNA validation for wheat genome editing with the CRISPR-Cas9 system | BMC biotechnology, 19(1) | http://dx.doi.org/10.1186/s12896-019-0565-z |
| 2019 | Balfourier F, Bouchet S, Robert S, De Oliveira R, Rimbert H, Kitt J, Choulet F, International Wheat Genome Sequencing Consortium*, Breedwheat Consortium, Paux W *(U Baumann is part of the International Wheat Genome Sequencing Consortium and contributed to this manuscript) | Worldwide phylogeography and history of wheat genetic diversity | Science Advances 5(5):eaav0536 | http://dx.doi.org/10.1126/sciadv.aav0536 |
| 2019 | Casartelli A, Melino V, Baumann U, Riboni M, Suchecki R, Jayasinghe N, Mendis H, Watanabe M, Erban A, Zuther E, et al. | Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat | Plant Molecular Biology 99(4-5):477-497 | http://dx.doi.org/10.1007/s11103-019-00831-z |
| 2019 | Cousins OH, Garnett TP, Rasmussen A, Mooney SJ, Smernik RJ, Brien CJ, Cavagnaro TR | Variable water cycles have a greater impact on wheat growth and soil nitrogen response than constant watering | Plant Science 290:110146 | http://dx.doi.org/10.1016/j.plantsci.2019.05.009 |
| 2019 | Fruzangohar M, Kalashyan E, Kalambettu P, Ens J, Wiebe K, Pozniak C J, Tricker PJ, Baumann U | Novel Informatic Tools to Support Functional Annotation of the Durum Wheat Genome | Front. Plant Sci. 10 | http://dx.doi.org/10.3389/fpls.2019.01244 |
| 2019 | Munns R, Day DA, … Miklavcic SJ, Plett, D., Roy SJ, … Tyerman SD | Energy costs of salt tolerance in crop plants | New Phytol. 225: 25-29 | https://doi.org/10.1111/nph.15864 |
| 2019 | Okada A, Arndell T, Borisjuk N, Sharma N, Watson‐Haigh NS, Tucker EJ, Baumann U, Langridge P, Whitford R | CRISPR/Cas9-mediated knockout of Ms1 enables the rapid generation of male-sterile hexaploid wheat lines for use in hybrid seed production | Plant Biotechnology Journal 17(10):1905-1913 | http://dx.doi.org/10.1111/pbi.13106 |
| 2019 | Okada T, Jayasinghe JEARM, Eckermann P, … Fleury D, Baumann U, Whitford R | Effects of Rht-B1 and Ppd-D1 loci on pollinator traits in wheat | Theor Appl Genet 132: 1965–1979 | http://dx.doi.org/10.1007/s00122-019-03329-w |
| 2019 | Pallotta MA, Warner P, Kouidri A, Tucker EJ, Baes M, Suchecki R, Watson‐Haigh N, Okada T, Garcia M, Sandhu A, Singh M, Wolters P, Albertsen MC, Cigan AM, Baumann U and Whitford R | Wheat ms5 male‐sterility is induced by recessive homoeologous A and D genome non‐specific lipid transfer proteins | Plant J, 99: 673-685 | http://dx.doi.org/10.1111/tpj.14350 |
| 2019 | Rahimi Eichi V, Okamoto M, Haefele SM, Jewell N, Brien C, Garnett T, Langridge P | Understanding the Interactions between Biomass, Grain Production and Grain Protein Content in High and Low Protein Wheat Genotypes under Controlled Environments | Agronomy 9 (11): 706 | https://doi.org/10.3390/agronomy9110706 |
| 2019 | Senthold S, Martre P, Ewert F, M. Dreccer F, Beres BL, Reynolds M, Braun H-J, Langridge P, Le Gouis J, Salse J, Baenziger PS | Model-driven multidisciplinary global research to meet future needs: The case for “Improving radiation use efficiency to increase yield” | Crop Sci. 59 (3): 843-849 | http://dx.doi.org/10.2135/cropsci2018.09.0562 |
| 2019 | Zotova L, Kurishbayev A, Jatayev S, Goncharov NP, Shamambayeva N, Kashapov A, Nuralov A, Otemissova A, Sereda S, Shvidchenko V, Lopato S, Schramm C, Jenkins C, Soole K, Langridge P, Shavrukov Y | The general transcription repressor TaDr1 is co-expressed with TaVm1 and TaFT1 in bread wheat under drought | Front. Genet. 10 | http://dx.doi.org/10.3389/fgene.2019.00063 |
| 2018 | Ismagul A, Yang N, Maltseva E, Iskakova G, Mazonka I, Skiba Y, Bi H, Eliby S, Jatayev S, Shavrukov Y, Borisjuk N, Langridge P | A biolistic method for high-throughput production of transgenic wheat plants with single gene insertions | BMC Plant Biology 18 (1): 135 | http://dx.doi.org/10.1186/s12870-018-1326-1 |
| 2018 | Zotova L, Kurishbayev A, Jatayev S, Khassanova G, Zhubatkanov A, Serikbay D, Sereda S, Sereda T, Shvidchenko V, Lopato S, Jenkins C, Soole K, Langridge P, Shavrukov Y | Genes encoding transcription factors TaDREB5 and TaNFYC-A7 are differentially expressed in leaves of bread wheat in response to drought, dehydration and ABA | Frontiers Plant Sci. 9 | http://dx.doi.org/10.3389/fpls.2018.01441 |
| 2018 | Sissons M, Pleming D, Taylor JD, Emebiri L, Collins NC | Effects of heat exposure from late sowing on the agronomic and technological quality of tetraploid wheat | Cereal Chem. 95(2): 274–287 | http://dx.doi.org/10.1002/cche.10027 |
| 2018 | Melino VJ, Casartelli A, George J, Rupasinghe T, Roessner U, Okamoto M, Heuer S | RNA Catabolites Contribute to the Nitrogen Pool and Support Growth Recovery of Wheat | Front. Plant Sci. 9 | http://dx.doi.org/10.3389/fpls.2018.01539 |
| 2018 | Ramesh SA, Kamran M, Sullivan W, Chirkova L, Okamoto M, Degryse F, McLauchlin M, Gilliham M, Tyerman SD | Aluminium-Activated Malate Transporters Can Facilitate GABA Transport | The Plant Cell 30(5):1147-1164 | http://dx.doi.org/10.1105/tpc.17.00864 |
| 2018 | Plett DC, Holtham LR, Okamoto M, Garnett TP | Nitrate uptake and its regulation in relation to improving nitrogen use efficiency in cereals | Semin. Cell Dev. Biol. 74: 97-104 | http://dx.doi.org/10.1016/j.semcdb.2017.08.027 |
| 2018 | Kastury F, Eichi VR, Enju A, Okamoto M, Heuer S, Melino V | Exploring the potential for top-dressing bread wheat with ammonium chloride to minimize grain yield losses under drought | Soil Sci. Plant Nutr. 64(5): 642-652 | http://dx.doi.org/10.1080/00380768.2018.1493341 |
| 2018 | Watson-Haigh NS, Suchecki R, Kalashyan E, Garcia M, Baumann, U | DAWN: A resource for yielding insights into the diversity among wheat genomes | BMC Genomics 19(1) | http://dx.doi.org/10.1186/s12864-018-5228-2 |
| 2018 | Tricker PJ, ElHabti A, Schmidt J, Fleury D | The physiological and genetic basis of combined drought and heat tolerance in wheat | J. Exp. Bot. 69(13): 3195-3210 | http://dx.doi.org/10.1093/jxb/ery081 |
| 2018 | Bi H, Shi J, Kovalchuk N, Luang S, Basanova N, Chirkova L, Zhang D, Shavrukov Y, Stepanenko A, Tricker P, Langridge P, Hrmova M, Lopato S, Borisjuk N | Overexpression of the TaSHN1 transcription factor in bread wheat leads to leaf surface modifications, improved drought tolerance and no yield penalty under controlled growth conditions | Plant, Cell Environ. 41(11): 2549-2566 | http://dx.doi.org/10.1111/pce.13339 |
| 2018 | Khan Z, Chopin J, Cai J, Rahimi-Eichi V, Haefele S, Miklavcic, SJ | Quantitative estimation of wheat phenotyping traits using ground and aerial imagery | Remote sensing. 10(7): 1081 | http://dx.doi.org/10.3390/rs10071081 |
| 2018 | Khan Z, Rahimi-Eichi V, Haefele S, Garnett T, Miklavcic SJ | Estimation of vegetation indices for high-throughput phenotyping of wheat using aerial imaging | Plant Methods. 14(1) | http://dx.doi.org/10.1186/s13007-018-0287-6 |
| 2018 | Asif M, Schilling R, Tilbrook J, Brien C, Dowling K, Rabie H,… Fleury D,… Pearson A | Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population | Theoretical and Applied Genetics 131(10): 2179-2196 | http://dx.doi.org/10.1007/s00122-018-3146-y |
| 2018 | Keeble-Gagnère G, Rigault P, Tibbits J, Pasam R, Hayden M, Forrest K, … Baumann U, Eckermann P, Fleury D, … Appels R | Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome | Genome Biology 19(1) | http://dx.doi.org/10.1186/s13059-018-1475-4 |
| 2017 | Alptekin B, Langridge P, Budak H | Abiotic stress miRNomes in the Triticeae | Functional & Integrative Genomics 17 (2-3): 145-170 | http://dx.doi.org/10.1007/s10142-016-0525-9 |
| 2017 | Schoppach R, Fleury D, Sinclair T, Sadok W | Transpiration Sensitivity to Evaporative Demand Across 120 Years of Breeding of Australian Wheat Cultivars | Journal of Agronomy and Crop Science 203(3): 219-226 | http://dx.doi.org/10.1111/jac.12193 |
| 2017 | Bi H, Kovalchuk N, Langridge P, Tricker P, Lopato S, Borisjuk N | The impact of drought on wheat leaf cuticle properties | BMC Plant Biology 17(1) | http://dx.doi.org/10.1186/s12870-017-1033-3 |
| 2017 | Qiongyan L, Cai, J, Berger B, Okamoto M, Miklavcic SJ | Detecting spikes of wheat plants using neural networks with Laws texture energy | Plant Methods 13(1) | http://dx.doi.org/10.1186/s13007-017-0231-1 |
| 2017 | Lohraseb I, Collins NC, Parent B | Diverging temperature responses of CO2 assimilation and plant development explain the overall effect of temperature on biomass accumulation in wheat leaves and grains | AoB Plants 9(1) | http://dx.doi.org/10.1093/aobpla/plw092 |
| 2017 | Shavrukov Y, Kurishbayev A, Jatayev S, Shvidchenko V, Zotova L, Koekemoer F, de Groot S, Soole K, Langridge P | Early Flowering as a Drought Escape Mechanism in Plants: How Can It Aid Wheat Production? | Frontiers in Plant Science 8 | http://dx.doi.org/10.3389/fpls.2017.01950 |
| 2017 | Parent B, Bonneau J, Maphosa L, Kovalchuk A, Langridge P, Fleury D | Quantifying Wheat Sensitivities to Environmental Constraints to Dissect Genotype x Environment Interactions in the Field | Plant Physiology 174(3): 1669-1682 | http://dx.doi.org/10.1104/pp.17.00372 |
| 2017 | Baenziger PS, Mumm RH, Bernardo R, Brummer EC, Langridge P, Simon P, Smith S | Plant breeding and genetics: a paper in the series on The Need for Agricultural Innovation to Sustainably Feed the World by 2050 | Council for Agricultural Science and Technology. Issue 57 | https://www.cast-science.org/wp-content/uploads/2018/12/CAST_IP57_Plant_Breeding_and_Geneti_3AD033F3C1763.pdf |
| 2016 | Shirdelmoghanloo H, Lohraseb I, Rabie HS, Brien C, Parent B and Collins NC | Heat susceptibility of grain filling in wheat (Triticum aestivum) linked with rapid chlorophyll loss during a 3-day heat treatment | Acta Physiologiae Plantarum 38 (8) | http://dx.doi.org/10.1007/s11738-016-2208-5 |
| 2016 | Shirdelmoghanloo H, Cozzolino D, Lohraseb I, Collins NC | Truncation of grain filling in wheat (Triticum aestivum) triggered by a brief heat stress during early grain filling: association with senescence responses and reductions in stem reserves | Functional Plant Biology. 43(10): 919–930 | http://dx.doi.org/10.1071/fp15384 |
| 2016 | Shirdelmoghanloo H, Taylor JD, Lohraseb I, Rabie H, Brien C, Timmins A, Martin P, Mather DE, Emebiri L, Collins NC | A QTL on the short arm of wheat (Triticum aestivum L.) chromosome 3B affects the stability of grain weight in plants exposed to a brief heat shock early in grain filling | BMC Plant Biology 16(1) | http://dx.doi.org/10.1186/s12870-016-0784-6 |
| 2016 | Mahjourimajd S, Kuchel H, Langridge P, Okamoto M | Evaluation of Australian wheat genotypes for response to variable nitrogen application | Plant Soil 399(1-2): 247-255. | http://dx.doi.org/10.1007/s11104-015-2694-z |
| 2016 | Shahinnia F, Le Roy J, Laborde B, Sznajder B, Kalambettu P, Mahjourimajd S, Tilbrook J, Fleury D | Genetic association of stomatal traits and yield in wheat grown in low rainfall environments | BMC Plant Biology 16(1) | http://dx.doi.org/10.1186/s12870-016-0838-9 |
| 2016 | Kovalchuk N, Laga H, Cai J, Kumar P, Parent B, Lu Z, Miklavcic SL, Haefele SM | Phenotyping of plants in competitive but controlled environments: a study of drought response in transgenic wheat | Functional Plant Biology 44(3): 290 | http://dx.doi.org/10.1071/fp16202 |
| Year | Authors | Title | Journal | DOI |