Publications

Year Authors Title Journal DOI
2020 Schmidt J, Claussen J, Worlein N, Eggert A, Fleury D, Garnett T, Gerth S Drought and heat stress tolerance screening in wheat using computed tomography Plant Methods 16 (1) http://dx.doi.org/10.1186/s13007-020-00565-w
2020 Schmidt J, Tricker PJ, Eckermann P, Kalambettu P, Garcia M, Fleury D Novel Alleles for Combined Drought and Heat Stress Tolerance in Wheat Front. Plant Sci. 10 http://dx.doi.org/10.3389/fpls.2019.01800
2020 Eichi VR, Okamoto M, Garnett T, Eckermann P, Darrier B, Riboni M, Langridge P Strengths and Weaknesses of National Variety Trial Data for Multi-Environment Analysis: A Case Study on Grain Yield and Protein Content Agronomy 10 (5): 753. http://dx.doi.org/10.3390/agronomy10050753
2020 Tura H, Edwards J, Gahlaut V, Garcia M, Sznajder B, Baumann U, Shahinnia F, Reynolds M, Langridge P, Balyan HS, Gupta PK, Schnurbusch T, Fleury D QTL analysis and fine mapping of a QTL for yield-related traits in wheat grown in dry and hot environments Theoretical and Applied Genetics, 133(1):239-257 http://dx.doi.org/10.1007/s00122-019-03454-6
2020

El Habti A, Fleury D, Jewell N, Garnett T, Tricker PJ

Tolerance of Combined Drought and Heat Stress Is Associated With Transpiration Maintenance and Water Soluble Carbohydrates in Wheat Grains Front. Plant Sci. 11:1555 https://www.frontiersin.org/article/10.3389/fpls.2020.568693
2019 Garcia M, Eckermann P, Haefele S, Satija S, Sznajder B, Timmins A, Baumann U, Wolters P, Mather DE, Fleury D Genome-wide association mapping of grain yield in a diverse collection of spring wheat (Triticum aestivum L.) evaluated in southern Australia PLOS ONE 14(2): e0211730 http://dx.doi.org/10.1371/journal.pone.0211730
2019 Khan Z and Miklavcic SJ An Automatic Field Plot Extraction Method from Aerial Orthomosaic Images Front. Plant Sci. 10 http://dx.doi.org/10.3389/fpls.2019.00683
2019 Arndell T, Sharma N, Langridge P, Baumann U, Watson-Haigh NS, Whitford R gRNA validation for wheat genome editing with the CRISPR-Cas9 system BMC biotechnology, 19(1) http://dx.doi.org/10.1186/s12896-019-0565-z
2019 Balfourier F, Bouchet S, Robert S, De Oliveira R, Rimbert H, Kitt J, Choulet F, International Wheat Genome Sequencing Consortium*, Breedwheat Consortium, Paux W *(U Baumann is part of the International Wheat Genome Sequencing Consortium and contributed to this manuscript) Worldwide phylogeography and history of wheat genetic diversity Science Advances 5(5):eaav0536 http://dx.doi.org/10.1126/sciadv.aav0536
2019 Casartelli A, Melino V, Baumann U, Riboni M, Suchecki R, Jayasinghe N, Mendis H, Watanabe M, Erban A, Zuther E, et al. Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat Plant Molecular Biology 99(4-5):477-497 http://dx.doi.org/10.1007/s11103-019-00831-z
2019 Cousins OH, Garnett TP, Rasmussen A, Mooney SJ, Smernik RJ, Brien CJ, Cavagnaro TR Variable water cycles have a greater impact on wheat growth and soil nitrogen response than constant watering Plant Science 290:110146 http://dx.doi.org/10.1016/j.plantsci.2019.05.009
2019 Fruzangohar M, Kalashyan E, Kalambettu P, Ens J, Wiebe K, Pozniak C J, Tricker PJ, Baumann U Novel Informatic Tools to Support Functional Annotation of the Durum Wheat Genome Front. Plant Sci. 10 http://dx.doi.org/10.3389/fpls.2019.01244
2019 Munns R, Day DA, … Miklavcic SJ, Plett, D., Roy SJ, … Tyerman SD Energy costs of salt tolerance in crop plants New Phytol. 225: 25-29 https://doi.org/10.1111/nph.15864
2019 Okada A, Arndell T, Borisjuk N, Sharma N, Watson‐Haigh NS, Tucker EJ, Baumann U, Langridge P, Whitford R CRISPR/Cas9-mediated knockout of Ms1 enables the rapid generation of male-sterile hexaploid wheat lines for use in hybrid seed production Plant Biotechnology Journal 17(10):1905-1913 http://dx.doi.org/10.1111/pbi.13106
2019 Okada T, Jayasinghe JEARM, Eckermann P, … Fleury D, Baumann U, Whitford R Effects of Rht-B1 and Ppd-D1 loci on pollinator traits in wheat Theor Appl Genet 132: 1965–1979 http://dx.doi.org/10.1007/s00122-019-03329-w
2019 Pallotta MA, Warner P, Kouidri A, Tucker EJ, Baes M, Suchecki R, Watson‐Haigh N, Okada T, Garcia M, Sandhu A, Singh M, Wolters P, Albertsen MC, Cigan AM, Baumann U and Whitford R Wheat ms5 male‐sterility is induced by recessive homoeologous A and D genome non‐specific lipid transfer proteins Plant J, 99: 673-685 http://dx.doi.org/10.1111/tpj.14350
2019 Rahimi Eichi V, Okamoto M, Haefele SM, Jewell N, Brien C, Garnett T, Langridge P Understanding the Interactions between Biomass, Grain Production and Grain Protein Content in High and Low Protein Wheat Genotypes under Controlled Environments Agronomy 9 (11): 706 https://doi.org/10.3390/agronomy9110706
2019 Senthold S, Martre P, Ewert F, M. Dreccer F, Beres BL, Reynolds M, Braun H-J, Langridge P, Le Gouis J, Salse J, Baenziger PS Model-driven multidisciplinary global research to meet future needs: The case for “Improving radiation use efficiency to increase yield” Crop Sci. 59 (3): 843-849 http://dx.doi.org/10.2135/cropsci2018.09.0562
2019 Zotova L, Kurishbayev A, Jatayev S, Goncharov NP, Shamambayeva N, Kashapov A, Nuralov A, Otemissova A, Sereda S, Shvidchenko V, Lopato S, Schramm C, Jenkins C, Soole K, Langridge P, Shavrukov Y The general transcription repressor TaDr1 is co-expressed with TaVm1 and TaFT1 in bread wheat under drought Front. Genet. 10 http://dx.doi.org/10.3389/fgene.2019.00063
2018 Ismagul A, Yang N, Maltseva E, Iskakova G, Mazonka I, Skiba Y, Bi H, Eliby S, Jatayev S, Shavrukov Y, Borisjuk N, Langridge P A biolistic method for high-throughput production of transgenic wheat plants with single gene insertions BMC Plant Biology 18 (1): 135 http://dx.doi.org/10.1186/s12870-018-1326-1
2018 Zotova L, Kurishbayev A, Jatayev S, Khassanova G, Zhubatkanov A, Serikbay D, Sereda S, Sereda T, Shvidchenko V, Lopato S, Jenkins C, Soole K, Langridge P, Shavrukov Y Genes encoding transcription factors TaDREB5 and TaNFYC-A7 are differentially expressed in leaves of bread wheat in response to drought, dehydration and ABA Frontiers Plant Sci. 9 http://dx.doi.org/10.3389/fpls.2018.01441
2018 Sissons M, Pleming D, Taylor JD, Emebiri L, Collins NC Effects of heat exposure from late sowing on the agronomic and technological quality of tetraploid wheat Cereal Chem. 95(2): 274–287 http://dx.doi.org/10.1002/cche.10027
2018 Melino VJ, Casartelli A, George J, Rupasinghe T, Roessner U, Okamoto M, Heuer S RNA Catabolites Contribute to the Nitrogen Pool and Support Growth Recovery of Wheat Front. Plant Sci. 9 http://dx.doi.org/10.3389/fpls.2018.01539
2018 Ramesh SA, Kamran M, Sullivan W, Chirkova L, Okamoto M, Degryse F, McLauchlin M, Gilliham M, Tyerman SD Aluminium-Activated Malate Transporters Can Facilitate GABA Transport The Plant Cell 30(5):1147-1164 http://dx.doi.org/10.1105/tpc.17.00864
2018 Plett DC, Holtham LR, Okamoto M, Garnett TP Nitrate uptake and its regulation in relation to improving nitrogen use efficiency in cereals Semin. Cell Dev. Biol. 74: 97-104 http://dx.doi.org/10.1016/j.semcdb.2017.08.027
2018 Kastury F, Eichi VR, Enju A, Okamoto M, Heuer S, Melino V Exploring the potential for top-dressing bread wheat with ammonium chloride to minimize grain yield losses under drought Soil Sci. Plant Nutr. 64(5): 642-652 http://dx.doi.org/10.1080/00380768.2018.1493341
2018 Watson-Haigh NS, Suchecki R, Kalashyan E, Garcia M, Baumann, U DAWN: A resource for yielding insights into the diversity among wheat genomes BMC Genomics 19(1) http://dx.doi.org/10.1186/s12864-018-5228-2
2018 Tricker PJ, ElHabti A, Schmidt J, Fleury D The physiological and genetic basis of combined drought and heat tolerance in wheat J. Exp. Bot. 69(13): 3195-3210 http://dx.doi.org/10.1093/jxb/ery081
2018 Bi H, Shi J, Kovalchuk N, Luang S, Basanova N, Chirkova L, Zhang D, Shavrukov Y, Stepanenko A, Tricker P, Langridge P, Hrmova M, Lopato S, Borisjuk N Overexpression of the TaSHN1 transcription factor in bread wheat leads to leaf surface modifications, improved drought tolerance and no yield penalty under controlled growth conditions Plant, Cell Environ. 41(11): 2549-2566 http://dx.doi.org/10.1111/pce.13339
2018 Khan Z, Chopin J, Cai J, Rahimi-Eichi V, Haefele S, Miklavcic, SJ Quantitative estimation of wheat phenotyping traits using ground and aerial imagery Remote sensing. 10(7): 1081 http://dx.doi.org/10.3390/rs10071081
2018 Khan Z, Rahimi-Eichi V, Haefele S, Garnett T, Miklavcic SJ Estimation of vegetation indices for high-throughput phenotyping of wheat using aerial imaging Plant Methods. 14(1) http://dx.doi.org/10.1186/s13007-018-0287-6
2018 Asif M, Schilling R, Tilbrook J, Brien C, Dowling K, Rabie H,… Fleury D,… Pearson A Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population Theoretical and Applied Genetics 131(10): 2179-2196 http://dx.doi.org/10.1007/s00122-018-3146-y
2018 Keeble-Gagnère G, Rigault P, Tibbits J, Pasam R, Hayden M, Forrest K, … Baumann U, Eckermann P, Fleury D, … Appels R Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome Genome Biology 19(1) http://dx.doi.org/10.1186/s13059-018-1475-4
2017 Alptekin B, Langridge P, Budak H Abiotic stress miRNomes in the Triticeae Functional & Integrative Genomics 17 (2-3): 145-170 http://dx.doi.org/10.1007/s10142-016-0525-9
2017 Schoppach R, Fleury D, Sinclair T, Sadok W Transpiration Sensitivity to Evaporative Demand Across 120 Years of Breeding of Australian Wheat Cultivars Journal of Agronomy and Crop Science 203(3): 219-226 http://dx.doi.org/10.1111/jac.12193
2017 Bi H, Kovalchuk N, Langridge P, Tricker P, Lopato S, Borisjuk N The impact of drought on wheat leaf cuticle properties BMC Plant Biology 17(1) http://dx.doi.org/10.1186/s12870-017-1033-3
2017 Qiongyan L, Cai, J, Berger B, Okamoto M, Miklavcic SJ Detecting spikes of wheat plants using neural networks with Laws texture energy Plant Methods 13(1) http://dx.doi.org/10.1186/s13007-017-0231-1
2017 Lohraseb I, Collins NC, Parent B Diverging temperature responses of CO2 assimilation and plant development explain the overall effect of temperature on biomass accumulation in wheat leaves and grains AoB Plants 9(1) http://dx.doi.org/10.1093/aobpla/plw092
2017 Shavrukov Y, Kurishbayev A, Jatayev S, Shvidchenko V, Zotova L, Koekemoer F, de Groot S, Soole K, Langridge P Early Flowering as a Drought Escape Mechanism in Plants: How Can It Aid Wheat Production? Frontiers in Plant Science 8 http://dx.doi.org/10.3389/fpls.2017.01950
2017 Parent B, Bonneau J, Maphosa L, Kovalchuk A, Langridge P, Fleury D Quantifying Wheat Sensitivities to Environmental Constraints to Dissect Genotype x Environment Interactions in the Field Plant Physiology 174(3): 1669-1682 http://dx.doi.org/10.1104/pp.17.00372
2017 Baenziger PS, Mumm RH, Bernardo R, Brummer EC, Langridge P, Simon P, Smith S Plant breeding and genetics: a paper in the series on The Need for Agricultural Innovation to Sustainably Feed the World by 2050 Council for Agricultural Science and Technology. Issue 57 https://www.cast-science.org/wp-content/uploads/2018/12/CAST_IP57_Plant_Breeding_and_Geneti_3AD033F3C1763.pdf
2016 Shirdelmoghanloo H, Lohraseb I, Rabie HS, Brien C, Parent B and Collins NC Heat susceptibility of grain filling in wheat (Triticum aestivum) linked with rapid chlorophyll loss during a 3-day heat treatment Acta Physiologiae Plantarum 38 (8) http://dx.doi.org/10.1007/s11738-016-2208-5
2016 Shirdelmoghanloo H, Cozzolino D, Lohraseb I, Collins NC Truncation of grain filling in wheat (Triticum aestivum) triggered by a brief heat stress during early grain filling: association with senescence responses and reductions in stem reserves Functional Plant Biology. 43(10): 919–930 http://dx.doi.org/10.1071/fp15384
2016 Shirdelmoghanloo H, Taylor JD, Lohraseb I, Rabie H, Brien C, Timmins A, Martin P, Mather DE, Emebiri L, Collins NC A QTL on the short arm of wheat (Triticum aestivum L.) chromosome 3B affects the stability of grain weight in plants exposed to a brief heat shock early in grain filling BMC Plant Biology 16(1) http://dx.doi.org/10.1186/s12870-016-0784-6
2016 Mahjourimajd S, Kuchel H, Langridge P, Okamoto M Evaluation of Australian wheat genotypes for response to variable nitrogen application Plant Soil 399(1-2): 247-255. http://dx.doi.org/10.1007/s11104-015-2694-z
2016 Shahinnia F, Le Roy J, Laborde B, Sznajder B, Kalambettu P, Mahjourimajd S, Tilbrook J, Fleury D Genetic association of stomatal traits and yield in wheat grown in low rainfall environments BMC Plant Biology 16(1) http://dx.doi.org/10.1186/s12870-016-0838-9
2016 Kovalchuk N, Laga H, Cai J, Kumar P, Parent B, Lu Z, Miklavcic SL, Haefele SM Phenotyping of plants in competitive but controlled environments: a study of drought response in transgenic wheat Functional Plant Biology 44(3): 290 http://dx.doi.org/10.1071/fp16202
Year Authors Title Journal DOI